FLOODING
For granny flats, the property can be flood-affected and still qualify under the 'Affordable Rental Housing SEPP' as long as some conditions are met. The S149 Certificate can say it is flood affected and yet it may still say it qualifies for Complying Develoment.
Basically as long as the site is not in a 'high risk' or 'flow path' flooding area and the floor level is above the level set by Council, you can do it.
The road to approval is certainly more expensive because you have to hire a hydraulic/structural engineer to certify the structure + design/certify the stormwater drainage system and have a Registered AHD Survey done, but it can be done. In my experiience the develpment costs increase by about $5,000- $7,000
The following is quoted from the (related) Exempt and Complying Development SEPP:
(2) The development must not be on any part of a flood control lot unless that part of the lot has been certified, for the purposes of the issue of the relevant complying development certificate, by the council or a professional engineer who specialises in hydraulic engineering as not being any of the following:
(a) a flood storage area,
(b) a floodway area,
(c) a flow path,
(d) a high hazard area,
(e) a high risk area.
(3) The development must, to the extent it is within a flood planning area:
(a) have all habitable rooms no lower than the floor levels set by the council for that lot, and
(b) have the part of the development at or below the flood planning level constructed of flood compatible material, and
(c) be able to withstand the forces of floodwater, debris and buoyancy up to the flood planning level (or if on-site refuge is proposed, the probable maximum flood level), and
(d) not increase flood affectation elsewhere in the floodplain, and
(e) have reliable access for pedestrians and vehicles from the development, at a minimum level equal to the lowest habitable floor level of the development, to a safe refuge, and
(f) have open car parking spaces or carports that are no lower than the 20-year flood level, and
(g) have driveways between car parking spaces and the connecting public roadway that will not be inundated by a depth of water greater than 0.3m during a 1:100 ARI (average recurrent interval) flood event.